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The data from the 25 present-day human genomes and 13 experimentally phased present-day genomes are available as a public dataset from and from

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Intervals give the range of values over tested human genomes for branch shortening; lowest and highest estimate for two or three methods for San-West African, Neanderthal–Denisova, Neanderthal–African and Denisova–African split; jackknife confidence interval over introgressed chunks for the Introgressing-Archaic–Archaic splits; and a union of the jackknife confidence interval in Supplementary Information section 16a and the highest posterior mode in Supplementary Information section 16b for the unknown archaic split.

analysed archaeological and anthropological data; H.

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